theliner.blogg.se - Cellprofiler analyst image registration

Cellprofiler analyst image registration full#
Cellprofiler analyst image registration windows 10#
Cellprofiler analyst image registration software#
Cellprofiler analyst image registration professional#

You are the main responsible to ensure that your application is complete according to the ad. Log into KTH’s recruitment system in order to apply to this position.

Familiarity with deep learning frameworks like Keras, TensforFlow, or PyTorch.

Postdoctoral experience in image analysis, within or outside academia, especially focused on methods development.

Excellent English communication skills, both spoken and written, as well as excellent interpersonal skills.

Proficiency with a scientific programming language (Python, R, or Matlab).

Experience with teaching and student supervision.

cells and microorganisms in cultures and tissue samples

Experience with algorithm development and development of analysis pipelines aiming to quantify and classify biological parameters extracted from microscopy data of e.g.

Cellprofiler analyst image registration software#

Experience with analysis software such as Imaris, ImageJ/Fiji, CellProfiler, NIS and Amira.In addition, the following qualifications are considered highly desireable: 20% time will be spent supporting projects at the LCI facility in Huddinge.Ī PhD in computer vision/image processing (or equivalent), or a PhD in bio-medicine/biology (or equivalent), combined with documented experience of computer programming and development of digital image analysis solutions is required. Supervision of master thesis students is part of the assignment. The job includes involvement and organization of courses and workshops in digital image processing and analysis with life science applications.

The BIIF has nodes in both Uppsala and Stockholm, but the assignment includes services to researchers at other universities in Sweden as well. You will work in short and long-term projects, providing research support and education in image analysis. We are looking for a PhD with a keen interest in implementation and adaption of image analysis algorithms for quantitative analysis of microscopy data to join the SciLifeLab BIIF (). ICY, image processing and analysis (good for big data)Send CV, publications, summary and references to:.Main use: General use workstation for image processing and analysis Ilastik, image processing software mainly for classification and segmentation.QuPath 0.2.3, for digital pathology and whole slide image analysis.Zen by Carl Zeiss Microscopy (blue lite).CellProfiler and CellProfiler Analyst, image processing and analysisĬonfiguration: 128GB memory and half a Grid P100 graphics card.Leica Application Suite X (LAS X) by Leica Microsystem.Pannoramic Viewer and CaseViewer 2.2 by 3DHistech.

Cellprofiler analyst image registration professional#

Huygens Professional by Scientific Volume Imaging, 3D and 4D data deconvolution with confocal, wide-field and time modules data visualization and analysis.Imaris by Bitplane, 3D and 4D data visualization and analysis, co-localization and volume rendering.Main use: 3D and 4D data visualization and analysis (Imaris, Huygens) deconvolution (Huygens).

Cellprofiler analyst image registration windows 10#

AngioTool for analyzing vessels ( Quick guide)Ĭonfiguration: HP Z840 Windows 10 workstation with 256 GB RAM and NVidia Quadro M4000 graphics card.

Aura by Spectral Imaging Instruments for Lago image analysis.

CellProfiler, image processing and analysis.

Fiji/ImageJ, image processing and analysis.

Pannoramic Viewer and CaseViewer 2.4 by 3DHistech.

Leica Application Suite X (LAS X) 3.0.1 by Leica Microsystems.

Cellprofiler analyst image registration full#

Zen (blue and black edition, full version) by Carl Zeiss Microscopy.Main use: General use workstation for image processing and analysis (also in 3D and 4D). Imaging workstation 1-2Ĭonfiguration: Lenovo workstation with Windows 10, Intel Xeon W-2135 3.7 GHz CPU, 128 GB RAM and NVidia Quadro P2000 graphics card. This will let BIU follow which software is being used and which is not. When you want to use an imaging workstation, please make a reservation in the online reservation system (Open IRIS) and mark in the Comments field which software you are going to use.